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BMCBI
2008
125views more  BMCBI 2008»
13 years 10 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
BMCBI
2010
198views more  BMCBI 2010»
13 years 10 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
BMCBI
2010
122views more  BMCBI 2010»
13 years 10 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
CORR
2010
Springer
160views Education» more  CORR 2010»
13 years 10 months ago
Scalable Probabilistic Databases with Factor Graphs and MCMC
Incorporating probabilities into the semantics of incomplete databases has posed many challenges, forcing systems to sacrifice modeling power, scalability, or treatment of relatio...
Michael L. Wick, Andrew McCallum, Gerome Miklau
CORR
2008
Springer
167views Education» more  CORR 2008»
13 years 10 months ago
Fast k Nearest Neighbor Search using GPU
Statistical measures coming from information theory represent interesting bases for image and video processing tasks such as image retrieval and video object tracking. For example...
Vincent Garcia, Eric Debreuve, Michel Barlaud