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CCECE
2006
IEEE
14 years 1 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...
TVLSI
2008
90views more  TVLSI 2008»
13 years 7 months ago
A Special-Purpose Architecture for Solving the Breakpoint Median Problem
Abstract--In this paper, we describe the design for a co-processor for whole-genome phylogenetic reconstruction. Our current design performs a parallelized breakpoint median comput...
Jason D. Bakos, Panormitis E. Elenis
SBACPAD
2003
IEEE
103views Hardware» more  SBACPAD 2003»
14 years 28 days ago
Performance Analysis Issues for Parallel Implementations of Propagation Algorithm
This paper presents a theoretical study to evaluate the performance of a family of parallel implementations of the propagation algorithm. The propagation algorithm is used to an i...
Leonardo Brenner, Luiz Gustavo Fernandes, Paulo Fe...
IPPS
2003
IEEE
14 years 28 days ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002
CAIP
1995
Springer
155views Image Analysis» more  CAIP 1995»
13 years 11 months ago
A Proposal for the Implementation of a Parallel Watershed Algorithm
In this paper a parallel implementation of a watershed algorithm is proposed. The algorithm is designed for a ring-architecture with distributed memory and a piece of shared memory...
Arnold Meijster, Jos B. T. M. Roerdink