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JPDC
2006
112views more  JPDC 2006»
13 years 8 months ago
Large scale multiple sequence alignment with simultaneous phylogeny inference
Multiple sequence alignment (MSA) and phylogenetic tree reconstruction are one of the most important problems in the computational biology. While both these problems are of great ...
Gilles Parmentier, Denis Trystram, Jaroslaw Zola
ICPP
2009
IEEE
13 years 5 months ago
Using Subfiling to Improve Programming Flexibility and Performance of Parallel Shared-file I/O
There are two popular parallel I/O programming styles used by modern scientific computational applications: unique-file and shared-file. Unique-file I/O usually gives satisfactory ...
Kui Gao, Wei-keng Liao, Arifa Nisar, Alok N. Choud...
TCSV
2010
13 years 2 months ago
High Performance Stereo Vision Designed for Massively Data Parallel Platforms
Abstract--Real-time stereo vision is attractive in many applications like robot navigation and 3D scene reconstruction. Data parallel platforms, e.g. GPU, is often used for real-ti...
Wei Yu, Tsuhan Chen, Franz Franchetti, James C. Ho...
PLDI
2012
ACM
11 years 10 months ago
Diderot: a parallel DSL for image analysis and visualization
Research scientists and medical professionals use imaging technology, such as computed tomography (CT) and magnetic resonance imaging (MRI) to measure a wide variety of biological...
Charisee Chiw, Gordon Kindlmann, John Reppy, Lamon...
BMCBI
2008
115views more  BMCBI 2008»
13 years 8 months ago
PARPST: a PARallel algorithm to find peptide sequence tags
Background: Protein identification is one of the most challenging problems in proteomics. Tandem mass spectrometry provides an important tool to handle the protein identification ...
Sara Brunetti, Elena Lodi, Elisa Mori, Maria Stell...