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» Parallelism in Gene Assembly
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JAL
2008
74views more  JAL 2008»
13 years 7 months ago
Solving satisfiability in the tile assembly model with a constant-size tileset
Biological systems are far more complex and robust than systems we can engineer today. One way to increase the complexity and robustness of our engineered systems is to study how ...
Yuriy Brun
TCS
2008
13 years 7 months ago
Solving NP-complete problems in the tile assembly model
Formalized study of self-assembly has led to the definition of the tile assembly model, a highly distributed parallel model of computation that may be implemented using molecules ...
Yuriy Brun
BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
TaxMan: a taxonomic database manager
Background: Phylogenetic analysis of large, multiple-gene datasets, assembled from public sequence databases, is rapidly becoming a popular way to approach difficult phylogenetic ...
Martin Jones, Mark Blaxter
ICS
2010
Tsinghua U.
13 years 11 months ago
Memory Consistency Conditions for Self-Assembly Programming
: Perhaps the two most significant theoretical questions about the programming of self-assembling agents are: (1) necessary and sufficient conditions to produce a unique terminal a...
Aaron Sterling
IEEEPACT
1998
IEEE
13 years 11 months ago
Data Dependence Analysis of Assembly Code
Determination of data dependences is a task typically performed with high-level language source code in today's optimizing and parallelizing compilers. Very little work has b...
Wolfram Amme, Peter Braun, Eberhard Zehendner, Fra...