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» Parallelism in Gene Assembly
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BMCBI
2005
81views more  BMCBI 2005»
13 years 7 months ago
Evolutionary sequence analysis of complete eukaryote genomes
Background: Gene duplication and gene loss during the evolution of eukaryotes have hindered attempts to estimate phylogenies and divergence times of species. Although current meth...
Jaime E. Blair, Prachi Shah, S. Blair Hedges
PPSN
1998
Springer
13 years 11 months ago
The Traveling Salesrep Problem, Edge Assembly Crossover, and 2-opt
Optimal results for the Traveling Salesrep Problem have been reported on problems with up to 3038 cities using a GA with Edge Assembly Crossover EAX. This paper rst attempts to ind...
Jean-Paul Watson, Charlie Ross, V. Eisele, J. Dent...
SCAM
2005
IEEE
14 years 1 months ago
Control Flow Graph Reconstruction for Assembly Language Programs with Delayed Instructions
Most software for embedded systems, including digital signal processing systems, is coded in assembly language. For both understanding the software and for reverse compiling it to...
Nerina Bermudo, Andreas Krall, R. Nigel Horspool
ITNG
2006
IEEE
14 years 1 months ago
Evaluating Parallel Computing Systems in Bioinformatics
The utilization of parallel processing in bioinformatics is a relatively new development, and wide spread use of parallel processing in this domain has been limited by the availab...
Erik S. Gough, Michael D. Kane
BMCBI
2011
13 years 2 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell