We consider a permutation-based model for the gene assembly process in ciliates. We give a procedure to decide whether a given micronuclear molecules may be assembled by using onl...
Hardware performance monitoring is the basis of modern performance analysis tools for application optimization. We are interested in providing such performance analysis tools for t...
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: the molec...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...