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» Parallelism in Gene Assembly
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SIGARCH
2008
144views more  SIGARCH 2008»
13 years 7 months ago
A stream chip-multiprocessor for bioinformatics
- Bioinformatics applications such as gene and protein sequence matching algorithms are characterized by the need to process large amounts of data. While uni-processor performance ...
Ravi Kiran Karanam, Arun Ravindran, Arindam Mukher...
MOC
2000
173views more  MOC 2000»
13 years 7 months ago
Computation of Gauss-Kronrod quadrature rules
Recently Laurie presented a new algorithm for the computation of (2n+1)-point Gauss-Kronrod quadrature rules with real nodes and positive weights. This algorithm first determines a...
Daniela Calvetti, Gene H. Golub, William B. Gragg,...
IPPS
2009
IEEE
14 years 2 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
IPPS
2008
IEEE
14 years 1 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
ESCIENCE
2007
IEEE
14 years 1 months ago
Distributed and Generic Maximum Likelihood Evaluation
This paper presents GMLE 1 , a generic and distributed framework for maximum likelihood evaluation. GMLE is currently being applied to astroinformatics for determining the shape o...
Travis J. Desell, Nathan Cole, Malik Magdon-Ismail...