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IPPS
2008
IEEE
14 years 4 months ago
Parallelized preprocessing algorithms for high-density oligonucleotide arrays
Studies of gene expression using high-density oligonucleotide microarrays have become standard in a variety of biological contexts. The data recorded using the microarray techniqu...
Markus Schmidberger, Ulrich Mansmann
ICPPW
2006
IEEE
14 years 4 months ago
Dynamic Algorithm Selection in Parallel GAMESS Calculations
Applications augmented with adaptive capabilities are becoming common in parallel computing environments which share resources such as main memory, network, or disk I/O. For large...
Nurzhan Ustemirov, Masha Sosonkina, Mark S. Gordon...
ICPP
2006
IEEE
14 years 4 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
IPCCC
2006
IEEE
14 years 4 months ago
SHARP: a new real-time scheduling algorithm to improve security of parallel applications on heterogeneous clusters
This paper addresses the problem of improving quality of security for real-time parallel applications on heterogeneous clusters. We propose a new security- and heterogeneity-drive...
Tao Xie 0004, Xiao Qin, Mais Nijim
HIPC
2004
Springer
14 years 3 months ago
A Parallel State Assignment Algorithm for Finite State Machines
This paper summarizes the design and implementation of a parallel algorithm for state assignment of large Finite State Machines (FSMs). High performance CAD tools are necessary to...
David A. Bader, Kamesh Madduri