The cache hierarchy design in existing SMT and superscalar processors is optimized for latency, but not for bandwidth. The size of the L1 data cache did not scale over the past de...
The MPI programming model hides network type and topology from developers, but also allows them to seamlessly distribute a computational job across multiple cores in both an intra ...
Text analysis tools are nowadays required to process increasingly large corpora which are often organized as small files (abstracts, news articles, etc). Cloud computing offers a ...
Background: Many analyses of microarray association studies involve permutation, bootstrap resampling and crossvalidation, that are ideally formulated as embarrassingly parallel c...
Ivo D. Shterev, Sin-Ho Jung, Stephen L. George, Ko...
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...