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ICPP
2007
IEEE
14 years 4 months ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
IEEEHPCS
2010
13 years 8 months ago
Discovering closed frequent itemsets on multicore: Parallelizing computations and optimizing memory accesses
The problem of closed frequent itemset discovery is a fundamental problem of data mining, having applications in numerous domains. It is thus very important to have efficient par...
Benjamin Négrevergne, Alexandre Termier, Je...
PPDP
2005
Springer
14 years 3 months ago
Heuristics, optimizations, and parallelism for protein structure prediction in CLP(FD)
The paper describes a constraint-based solution to the protein folding problem on face-centered cubic lattices—a biologically meaningful approximation of the general protein fol...
Alessandro Dal Palù, Agostino Dovier, Enric...
EOR
2010
113views more  EOR 2010»
13 years 10 months ago
Optimal solutions for unrelated parallel machines scheduling problems using convex quadratic reformulations
We consider the unrelated parallel machines scheduling problem where jobs have earliness and tardiness penalties and a common due date. We formulate this problem and some of its v...
Marie-Christine Plateau, Yasmin A. Rios-Solis
SIGCOMM
2009
ACM
14 years 4 months ago
Optimizing the BSD routing system for parallel processing
The routing architecture of the original 4.4BSD [3] kernel has been deployed successfully without major design modification for over 15 years. In the unified routing architectur...
Qing Li, Kip Macy