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ISMB
1994
13 years 11 months ago
Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars
We describe and demonstrate the effectiveness of a method of predicting protein secondary structures, sheet regions in particular, using a class of stochastic tree grammars as rep...
Hiroshi Mamitsuka, Naoki Abe
WCE
2007
13 years 11 months ago
Sparse Matrix Multiplication Using UPC
—Partitioned global address space (PGAS) languages, such as Unified Parallel C (UPC) have the promise of being productive. Due to the shared address space view that they provide,...
Hoda El-Sayed, Eric Wright
HPDC
2010
IEEE
13 years 11 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
HPDC
2010
IEEE
13 years 11 months ago
Detouring and replication for fast and reliable internet-scale stream processing
iFlow is a replication-based system that can achieve both fast and reliable processing of high volume data streams on the Internet scale. iFlow uses a low degree of replication in...
Christopher McConnell, Fan Ping, Jeong-Hyon Hwang
BMCBI
2008
115views more  BMCBI 2008»
13 years 10 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...