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» Parallelizing the Phylogeny Problem
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ICLP
2009
Springer
14 years 8 months ago
Finding Similar or Diverse Solutions in Answer Set Programming
We study finding similar or diverse solutions of a given computational problem, in answer set programming, and introduce offline methods and online methods to compute them using an...
Thomas Eiter, Esra Erdem, Halit Erdogan, Michael F...
JCB
1998
105views more  JCB 1998»
13 years 7 months ago
Constructing and Counting Phylogenetic Invariants
Abstract. The method of invariants is an approach to the problem of reconstructing the phylogenetic tree of a collection of m taxa using nucleotide sequence data. Models for the re...
Steven N. Evans, Xiaowen Zhou
CORR
2008
Springer
90views Education» more  CORR 2008»
13 years 7 months ago
A Pseudo-Boolean Solution to the Maximum Quartet Consistency Problem
Determining the evolutionary history of a given biological data is an important task in biological sciences. Given a set of quartet topologies over a set of taxa, the Maximum Quart...
António Morgado, João P. Marques Sil...
FUIN
2010
109views more  FUIN 2010»
13 years 6 months ago
Combinatorial Optimization Solutions for the Maximum Quartet Consistency Problem
Given a set of taxa S and a complete set of quartet topologies Q over S, the problem of determining a phylogeny that satisfies the maximum number of topologies is called the Maxi...
António Morgado, João Marques-Silva
IPPS
2005
IEEE
14 years 1 months ago
Bioinformatics on a Heterogeneous Java Distributed System
A programmable Java distributed system, which utilises the free resources of a heterogeneous set of computers linked together by a network, has been developed. The system has been...
Andrew J. Page, Thomas M. Keane, Thomas J. Naughto...