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CSB
2003
IEEE
152views Bioinformatics» more  CSB 2003»
14 years 1 months ago
A Parallel Genetic Algorithm for Physical Mapping of Chromosomes
Physical map reconstruction in the presence of errors is a central problem in genetics of high computational complexity. A parallel genetic algorithm for a maximum likelihood esti...
Suchendra M. Bhandarkar, Jinling Huang, Jonathan A...
IPPS
2003
IEEE
14 years 1 months ago
Parallel Tabu Search in a Heterogeneous Environment
In this paper, we discuss a parallel tabu search algorithm with implementation in a heterogeneous environment. Two parallelization strategies are integrated: functional decomposit...
Ahmad A. Al-Yamani, Sadiq M. Sait, Hassan Barada, ...
IPPS
2003
IEEE
14 years 1 months ago
Parallel Detection of Regulatory Elements with gMP
The detection of regulatory elements from a large set of regulatory regions is a challenging problem in computational genomics. However, computational methods to extract this biol...
Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Sant...
PPOPP
2003
ACM
14 years 1 months ago
Factorization with morton-ordered quadtree matrices for memory re-use and parallelism
Quadtree matrices using Morton-order storage provide natural blocking on every level of a memory hierarchy. Writing the natural recursive algorithms to take advantage of this bloc...
Jeremy D. Frens, David S. Wise
GCC
2003
Springer
14 years 1 months ago
Coarse-Grained Distributed Parallel Programming Interface for Grid Computing
Abstract. In this paper, a practical coarse-grained distributed parallel programming interface for grid computing (PI4GC) is introduced. des a group of generic and abstract functio...
Yongwei Wu, Qing Wang, Guangwen Yang, Weimin Zheng