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BMCBI
2011
13 years 2 months ago
Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms
Background: The Cancer Genome Anatomy Project (CGAP) xProfiler and cDNA Digital Gene Expression Displayer (DGED) have been made available to the scientific community over a decade...
Andrew T. Milnthorpe, Mikhail Soloviev
BMCBI
2008
116views more  BMCBI 2008»
13 years 7 months ago
GBParsy: A GenBank flatfile parser library with high speed
Background: GenBank flatfile (GBF) format is one of the most popular sequence file formats because of its detailed sequence features and ease of readability. To use the data in th...
Tae-Ho Lee, Yeon-Ki Kim, Baek Hie Nahm
ACL
2000
13 years 9 months ago
Memory-Efficient and Thread-Safe Quasi-Destructive Graph Unification
In terms of both speed and memory consumption, graph unification remains the most expensive component of unification-based grammar parsing. We present a technique to reduce the me...
Marcel P. van Lohuizen
EMNLP
2011
12 years 7 months ago
Training a Log-Linear Parser with Loss Functions via Softmax-Margin
Log-linear parsing models are often trained by optimizing likelihood, but we would prefer to optimise for a task-specific metric like Fmeasure. Softmax-margin is a convex objecti...
Michael Auli, Adam Lopez
ACL
2007
13 years 9 months ago
Fast Unsupervised Incremental Parsing
This paper describes an incremental parser and an unsupervised learning algorithm for inducing this parser from plain text. The parser uses a representation for syntactic structur...
Yoav Seginer