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» Parsing Biomedical Literature
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BMCBI
2007
168views more  BMCBI 2007»
13 years 8 months ago
Advancing translational research with the Semantic Web
Background: A fundamental goal of the U.S. National Institute of Health (NIH) "Roadmap" is to strengthen Translational Research, defined as the movement of discoveries i...
Alan Ruttenberg, Tim Clark, William Bug, Matthias ...
BIRD
2007
Springer
168views Bioinformatics» more  BIRD 2007»
14 years 14 days ago
Ontology-Based MEDLINE Document Classification
Abstract. An increasing and overwhelming amount of biomedical information is available in the research literature mainly in the form of free-text. Biologists need tools that automa...
Fabrice Camous, Stephen Blott, Alan F. Smeaton
EKAW
2008
Springer
13 years 10 months ago
Unsupervised Discovery of Compound Entities for Relationship Extraction
In this paper we investigate unsupervised population of a biomedical ontology via information extraction from biomedical literature. Relationships in text seldom connect simple ent...
Cartic Ramakrishnan, Pablo N. Mendes, Shaojun Wang...
NAR
2011
197views Computer Vision» more  NAR 2011»
12 years 11 months ago
dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa
dictyBase (http://www.dictybase.org), the model organism database for Dictyostelium, aims to provide the broad biomedical research community with well integrated, high quality dat...
Pascale Gaudet, Petra Fey, Siddhartha Basu, Yulia ...
DILS
2006
Springer
14 years 4 days ago
Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions
Linking the biomedical literature to other data resources is notoriously difficult and requires text mining. Text mining aims to automatically extract facts from literature. Since ...
Tobias Kuhn, Loïc Royer, Norbert E. Fuchs, Mi...