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» Parsing with Non-Deterministic Functions
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NIPS
2007
13 years 9 months ago
Mining Internet-Scale Software Repositories
Large repositories of source code create new challenges and opportunities for statistical machine learning. Here we first develop Sourcerer, an infrastructure for the automated c...
Erik Linstead, Paul Rigor, Sushil Krishna Bajracha...
CIDR
2009
119views Algorithms» more  CIDR 2009»
13 years 8 months ago
DBMSs Should Talk Back Too
Natural language user interfaces to database systems have been studied for several decades now. They have mainly focused on parsing and interpreting natural language queries to ge...
Alkis Simitsis, Yannis E. Ioannidis
BMCBI
2010
163views more  BMCBI 2010»
13 years 7 months ago
Integration of open access literature into the RCSB Protein Data Bank using BioLit
Background: Biological data have traditionally been stored and made publicly available through a variety of on-line databases, whereas biological knowledge has traditionally been ...
Andreas Prlic, Marco A. Martinez, Dimitris Dimitro...
BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Walk-weighted subsequence kernels for protein-protein interaction extraction
Background: The construction of interaction networks between proteins is central to understanding the underlying biological processes. However, since many useful relations are exc...
Seonho Kim, Juntae Yoon, Jihoon Yang, Seog Park
BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Bacillus anthracis genome organization in light of whole transcriptome sequencing
Emerging knowledge of whole prokaryotic transcriptomes could validate a number of theoretical concepts introduced in the early days of genomics. What are the rules connecting gene...
Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, ...