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    COMPLIFE
    2005
    Springer
    125views Applied Computing» more  COMPLIFE 2005»
    Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
    14 years 1 months ago
    Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
    Download  www.whoi.edu
    During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
    Markus Bauer, Gunnar W. Klau, Knut Reinert
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    BMCBI
    2004
    177views more  BMCBI 2004»
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
    13 years 7 months ago
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
    Download  www.biomedcentral.com
    Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
    Andrew F. Neuwald, Jun S. Liu
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    COCOA
    2007
    Springer
    130views Discrete Geometry» more  COCOA 2007»
    A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem
    14 years 1 months ago
    A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem
    Download  www.mpi-inf.mpg.de
    Abstract. We present a branch-and-bound (bb) algorithm for the multiple sequence alignment problem (MSA), one of the most important problems in computational biology. The upper bou...
    Ernst Althaus, Stefan Canzar
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    CP
    2003
    Springer
    182views Artificial Intelligence» more  CP 2003»
    A SAT-Based Approach to Multiple Sequence Alignment
    14 years 24 days ago
    A SAT-Based Approach to Multiple Sequence Alignment
    Download  4c.ucc.ie
    Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
    Steven David Prestwich, Desmond G. Higgins, Orla O...
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    PSB
    2008
    85views Applied Computing» more  PSB 2008»
    Local Reliability Measures from Sets of Co-Optimal Multiple Sequence Alignments
    13 years 9 months ago
    Local Reliability Measures from Sets of Co-Optimal Multiple Sequence Alignments
    Download  psb.stanford.edu
    Giddy Landan, Dan Grauer
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