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BMCBI
2011
14 years 9 months ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
ALGORITHMICA
2010
137views more  ALGORITHMICA 2010»
15 years 23 days ago
Deciding k-Colorability of P5-Free Graphs in Polynomial Time
The problem of computing the chromatic number of a P5-free graph (a graph which contains no path on 5 vertices as an induced subgraph) is known to be NP-hard. However, we show tha...
Chính T. Hoàng, Marcin Kaminski, Vad...
ENTCS
2002
110views more  ENTCS 2002»
15 years 2 months ago
Uniform Solution of Parity Games on Prefix-Recognizable Graphs
Walukiewicz gave in 1996 a solution for parity games on pushdown graphs: he proved the existence of pushdown strategies and determined the winner with an EXPTIME procedure. We giv...
Thierry Cachat
ESA
2004
Springer
137views Algorithms» more  ESA 2004»
15 years 7 months ago
Fast 3-Coloring Triangle-Free Planar Graphs
We show the first o(n2 ) algorithm for coloring vertices of trianglefree planar graphs using three colors. The time complexity of the algorithm is O(n log n). Our approach can be ...
Lukasz Kowalik
OTM
2010
Springer
15 years 10 days ago
Towards Evaluating GRASIM for Ontology-Based Data Matching
The GRASIM (Graph-Aided Similarity calculation) algorithm is designed to solve the problem of ontology-based data matching. We subdivide the matching problem into the ones of restr...
Yan Tang