76 search results - page 13 / 16 » Pattern Matching in Degenerate DNA RNA Sequences |
BMCBI
2008
13 years 7 months ago
2008
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
ICASSP
2007
IEEE
14 years 1 months ago
2007
IEEE
Recently, profile context-sensitive HMMs (profile-csHMMs) have been proposed which are very effective in modeling the common patterns and motifs in related symbol sequences. Pro...
BMCBI
2006
13 years 7 months ago
2006
Background: Multiple sequence alignment is the foundation of many important applications in bioinformatics that aim at detecting functionally important regions, predicting protein...
ICDE
2003
IEEE
14 years 8 months ago
2003
IEEE
We present an index structure for managing weightedsequences in large databases. A weighted-sequence is defined as a two-dimensional structure where each element in the sequence i...
GCB
2000
Springer
13 years 11 months ago
2000
Springer
In previous work [10], we considered algorithms related to the statistics of matches with words and regular expressions in texts generated by Bernoulli or Markov sources. In this w...