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CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
13 years 11 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
KDD
2007
ACM
184views Data Mining» more  KDD 2007»
14 years 7 months ago
Dynamic hybrid clustering of bioinformatics by incorporating text mining and citation analysis
To unravel the concept structure and dynamics of the bioinformatics field, we analyze a set of 7401 publications from the Web of Science and MEDLINE databases, publication years 1...
Bart De Moor, Frizo A. L. Janssens, Wolfgang Gl&au...
DGO
2008
128views Education» more  DGO 2008»
13 years 9 months ago
Ontology generation for large email collections
This paper presents a new approach to identifying concepts expressed in a collection of email messages, and organizing them into an ontology or taxonomy for browsing. It incorpora...
Hui Yang, Jamie Callan
BIBM
2008
IEEE
112views Bioinformatics» more  BIBM 2008»
14 years 1 months ago
Fast Alignments of Metabolic Networks
Network alignments are extensively used for comparing, exploring, and predicting biological networks. Existing alignment tools are mostly based on isomorphic and homeomorphic embe...
Qiong Cheng, Piotr Berman, Robert W. Harrison, Ale...
ANCS
2006
ACM
14 years 1 months ago
Advanced algorithms for fast and scalable deep packet inspection
Modern deep packet inspection systems use regular expressions to define various patterns of interest in network data streams. Deterministic Finite Automata (DFA) are commonly used...
Sailesh Kumar, Jonathan S. Turner, John Williams