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BMCBI
2004
177views more  BMCBI 2004»
13 years 7 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
TKDE
2008
218views more  TKDE 2008»
13 years 7 months ago
A General Model for Sequential Pattern Mining with a Progressive Database
Although there have been many recent studies on the mining of sequential patterns in a static database and in a database with increasing data, these works, in general, do not fully...
Jen-Wei Huang, Chi-Yao Tseng, Jian Chih Ou, Ming-S...
CINQ
2004
Springer
177views Database» more  CINQ 2004»
14 years 1 months ago
Generic Pattern Mining Via Data Mining Template Library
Frequent Pattern Mining (FPM) is a very powerful paradigm for mining informative and useful patterns in massive, complex datasets. In this paper we propose the Data Mining Templat...
Mohammed Javeed Zaki, Nilanjana De, Feng Gao, Paol...
PR
2008
145views more  PR 2008»
13 years 7 months ago
Probabilistic suffix models for API sequence analysis of Windows XP applications
Given the pervasive nature of malicious mobile code (viruses, worms, etc.), developing statistical/structural models of code execution is of considerable importance. We investigat...
Geoffrey Mazeroff, Jens Gregor, Michael G. Thomaso...
ALMOB
2008
85views more  ALMOB 2008»
13 years 7 months ago
Noisy: Identification of problematic columns in multiple sequence alignments
Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...