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    BMCBI
    2008
    178views more  BMCBI 2008»
    Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate vi
    13 years 8 months ago
    Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate vi
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    Background: The DNA microarray technology allows the measurement of expression levels of thousands of genes under tens/hundreds of different conditions. In microarray data, genes ...
    Kin-On Cheng, Ngai-Fong Law, Wan-Chi Siu, Alan Wee...
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    BMCBI
    2006
    163views more  BMCBI 2006»
    Ensemble attribute profile clustering: discovering and characterizing groups of genes with similar patterns of biological featur
    13 years 8 months ago
    Ensemble attribute profile clustering: discovering and characterizing groups of genes with similar patterns of biological featur
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    Background: Ensemble attribute profile clustering is a novel, text-based strategy for analyzing a userdefined list of genes and/or proteins. The strategy exploits annotation data ...
    J. R. Semeiks, A. Rizki, Mina J. Bissell, I. Saira...
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    BMCBI
    2011
    242views Artificial Intelligence» more  BMCBI 2011»
    Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
    13 years 3 months ago
    Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
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    Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
    Paolo G. V. Martini, Davide Risso, Gabriele Sales,...
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    CICLING
    2010
    Springer
    167views Natural Language Processing» more  CICLING 2010»
    Extraction of Genic Interactions with the Recursive Logical Theory of an Ontology
    14 years 1 months ago
    Extraction of Genic Interactions with the Recursive Logical Theory of an Ontology
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    We introduce an Information Extraction (IE) system which uses the logical theory of an ontology as a generalisation of the typical information extraction patterns to extract biolog...
    Alain-Pierre Manine, Érick Alphonse, Philip...
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    BIODATAMINING
    2008
    135views more  BIODATAMINING 2008»
    Fast Gene Ontology based clustering for microarray experiments
    13 years 8 months ago
    Fast Gene Ontology based clustering for microarray experiments
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    Background: Analysis of a microarray experiment often results in a list of hundreds of diseaseassociated genes. In order to suggest common biological processes and functions for t...
    Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi
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