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» Performance Analysis of Sequence Alignment Applications
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WIDM
2012
ACM
12 years 4 months ago
Replaying history on process models for conformance checking and performance analysis
Process mining techniques use event data to discover process models, to check the conformance of predefined process models, and to extend such models with information about bottl...
Wil M. P. van der Aalst, Arya Adriansyah, Boudewij...
CORR
2010
Springer
120views Education» more  CORR 2010»
13 years 6 months ago
Advances in the Biomedical Applications of the EELA Project
In the last years an increasing demand for Grid Infrastructures has result edin several international collaborations. This is the case of the EELA Project, which has brought togeth...
Vicente Hernández, Ignacio Blanquer, Gabrie...
TCBB
2008
95views more  TCBB 2008»
13 years 9 months ago
Solving the Problem of Trans-Genomic Query with Alignment Tables
Abstract-- The trans-genomic query (TGQ) problem -- enabling the free query of biological information, even across genomes -- is a central challenge facing bioinformatics. Solution...
Douglas Stott Parker Jr., Ruey-Lung Hsiao, Yi Xing...
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
14 years 2 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
BMCBI
2006
117views more  BMCBI 2006»
13 years 9 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala