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» Performance Analysis of Sequence Alignment Applications
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BMCBI
2010
142views more  BMCBI 2010»
15 years 2 months ago
Classification of protein sequences by means of irredundant patterns
Background: The classification of protein sequences using string algorithms provides valuable insights for protein function prediction. Several methods, based on a variety of diff...
Matteo Comin, Davide Verzotto
CVPR
2006
IEEE
16 years 4 months ago
Aligning ASL for Statistical Translation Using a Discriminative Word Model
We describe a method to align ASL video subtitles with a closed-caption transcript. Our alignments are partial, based on spotting words within the video sequence, which consists o...
Ali Farhadi, David A. Forsyth
104
Voted
BMCBI
2006
172views more  BMCBI 2006»
15 years 2 months ago
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Background: The majority of peptide bonds in proteins are found to occur in the trans conformation. However, for proline residues, a considerable fraction of Prolyl peptide bonds ...
Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas ...
124
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ICSM
2007
IEEE
15 years 8 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
SC
2003
ACM
15 years 7 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal