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» Performance Analysis of Sequence Alignment Applications
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BMCBI
2010
142views more  BMCBI 2010»
15 years 2 months ago
Classification of protein sequences by means of irredundant patterns
Background: The classification of protein sequences using string algorithms provides valuable insights for protein function prediction. Several methods, based on a variety of diff...
Matteo Comin, Davide Verzotto
104
Voted
CVPR
2006
IEEE
16 years 4 months ago
Aligning ASL for Statistical Translation Using a Discriminative Word Model
We describe a method to align ASL video subtitles with a closed-caption transcript. Our alignments are partial, based on spotting words within the video sequence, which consists o...
Ali Farhadi, David A. Forsyth
BMCBI
2006
172views more  BMCBI 2006»
15 years 2 months ago
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Background: The majority of peptide bonds in proteins are found to occur in the trans conformation. However, for proline residues, a considerable fraction of Prolyl peptide bonds ...
Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas ...
122
Voted
ICSM
2007
IEEE
15 years 8 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
SC
2003
ACM
15 years 7 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal