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» Performance Analysis of Sequence Alignment Applications
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BMCBI
2010
156views more  BMCBI 2010»
13 years 9 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
BMCBI
2008
154views more  BMCBI 2008»
13 years 9 months ago
GenomeMatcher: A graphical user interface for DNA sequence comparison
Background: The number of available genome sequences is increasing, and easy-to-use software that enables efficient comparative analysis is needed. Results: We developed GenomeMat...
Yoshiyuki Ohtsubo, Wakako Ikeda-Ohtsubo, Yuji Naga...
AINA
2005
IEEE
14 years 2 months ago
Implementation and Evaluation of a Java Based Computational Grid for Bioinformatics Applications
In the present study, THUBioGrid, an experimental distributed computing application for bioinformatics (BioGrid) is proposed. THUBioGrid incorporates directory services (data and ...
Chao-Tung Yang, Yi-Chun Hsiung, Heng-Chuan Kan
ICCV
2007
IEEE
14 years 3 months ago
Laplacian PCA and Its Applications
Dimensionality reduction plays a fundamental role in data processing, for which principal component analysis (PCA) is widely used. In this paper, we develop the Laplacian PCA (LPC...
Deli Zhao, Zhouchen Lin, Xiaoou Tang
VLSISP
2010
119views more  VLSISP 2010»
13 years 3 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton