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» Performance Analysis of Sequence Alignment Applications
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ITNG
2006
IEEE
14 years 3 months ago
Evaluating Parallel Computing Systems in Bioinformatics
The utilization of parallel processing in bioinformatics is a relatively new development, and wide spread use of parallel processing in this domain has been limited by the availab...
Erik S. Gough, Michael D. Kane
BMCBI
2005
119views more  BMCBI 2005»
13 years 9 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona
ERSA
2006
129views Hardware» more  ERSA 2006»
13 years 10 months ago
Group-Alignment based Accurate Floating-Point Summation on FPGAs
Floating-point summation is one of the most important operations in scientific/numerical computing applications and also a basic subroutine (SUM) in BLAS (Basic Linear Algebra Sub...
Chuan He, Guan Qin, Mi Lu, Wei Zhao
IJCV
2007
208views more  IJCV 2007»
13 years 9 months ago
Binet-Cauchy Kernels on Dynamical Systems and its Application to the Analysis of Dynamic Scenes
We derive a family of kernels on dynamical systems by applying the Binet-Cauchy theorem to trajectories of states. Our derivation provides a unifying framework for all kernels on d...
S. V. N. Vishwanathan, Alexander J. Smola, Ren&eac...
BMCBI
2010
145views more  BMCBI 2010»
13 years 9 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...