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» Performance Analysis of Sequence Alignment Applications
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IPPS
2006
IEEE
14 years 3 months ago
A study of MPI performance analysis tools on Blue Gene/L
Applications on todays massively parallel supercomputers rely on performance analysis tools to guide them toward scalable performance on thousands of processors. However, conventi...
I-Hsin Chung, Robert Walkup, Hui-Fang Wen, Hao Yu
BMCBI
2010
123views more  BMCBI 2010»
13 years 9 months ago
A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction
Background: Predicting which molecules can bind to a given binding site of a protein with known 3D structure is important to decipher the protein function, and useful in drug desi...
Brice Hoffmann, Mikhail Zaslavskiy, Jean-Philippe ...
ISMB
1993
13 years 10 months ago
Detection of Correlations in tRNA Sequences with Structural Implications
Using a flexible representation of biological sequences, we have performed a comparative analysis of 1208 known tRNA sequences. We believe we our technique is a more sensitive met...
Tod M. Klingler, Douglas L. Brutlag
TNN
1998
254views more  TNN 1998»
13 years 8 months ago
Comparative analysis of fuzzy ART and ART-2A network clustering performance
—Adaptive resonance theory (ART) describes a family of self-organizing neural networks, capable of clustering arbitrary sequences of input patterns into stable recognition codes....
T. Frank, Karl-Friedrich Kraiss, Torsten Kuhlen
BMCBI
2010
95views more  BMCBI 2010»
13 years 9 months ago
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA
Background: In recent years, the number of available RNA structures has rapidly grown reflecting the increased interest on RNA biology. Similarly to the studies carried out two de...
Emidio Capriotti, Marc A. Martí-Renom