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» Performance Analysis of Sequence Alignment Applications
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CIBCB
2006
IEEE
14 years 3 months ago
Machine Learning in Basecalling Decoding Trace Peak Behaviour
— DNA sequence basecalling is commonly regarded as a solved problem, despite significant error rates being reflected in inaccuracies in databases and genome annotations. These er...
David Thornley, Stavros Petridis
CCGRID
2005
IEEE
14 years 2 months ago
Mapping DAG-based applications to multiclusters with background workload
Before an application modelled as a Directed Acyclic Graph (DAG) is executed on a heterogeneous system, a DAG mapping policy is often enacted. After mapping, the tasks (in the DAG...
Ligang He, Stephen A. Jarvis, Daniel P. Spooner, D...
SDM
2007
SIAM
109views Data Mining» more  SDM 2007»
13 years 10 months ago
Segmentations with Rearrangements
Sequence segmentation is a central problem in the analysis of sequential and time-series data. In this paper we introduce and we study a novel variation to the segmentation proble...
Aristides Gionis, Evimaria Terzi
HICSS
2007
IEEE
187views Biometrics» more  HICSS 2007»
14 years 3 months ago
A Service-Oriented Data Integration and Analysis Environment for In Silico Experiments and Bioinformatics Research
In this paper, we present a practical experiment of building a service-oriented system upon current web services technologies and bioinformatics middleware. The system allows scie...
Xiaorong Xiang, Gregory R. Madey, Jeanne Romero-Se...
BMCBI
2006
118views more  BMCBI 2006»
13 years 9 months ago
Automatic generation of gene finders for eukaryotic species
Background: The number of sequenced eukaryotic genomes is rapidly increasing. This means that over time it will be hard to keep supplying customised gene finders for each genome. ...
Kasper Munch, Anders Krogh