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ICCS
2009
Springer
14 years 2 months ago
GPU Accelerated RNA Folding Algorithm
Many bioinformatics studies require the analysis of RNA or DNA structures. More specifically, extensive work is done to elaborate efficient algorithms able to predict the 2-D fold...
Guillaume Rizk, Dominique Lavenier
PODC
2010
ACM
13 years 11 months ago
Transactional predication: high-performance concurrent sets and maps for STM
Concurrent collection classes are widely used in multi-threaded programming, but they provide atomicity only for a fixed set of operations. Software transactional memory (STM) pr...
Nathan Grasso Bronson, Jared Casper, Hassan Chafi,...
IPPS
2006
IEEE
14 years 1 months ago
A distributed paging RAM grid system for wide-area memory sharing
Memory-intensive applications often suffer from the poor performance of disk swapping when memory is inadequate. Remote memory sharing schemes, which provide a remote memory that ...
Rui Chu, Nong Xiao, Yongzhen Zhuang, Yunhao Liu, X...
CLUSTER
2004
IEEE
13 years 11 months ago
FTC-Charm++: an in-memory checkpoint-based fault tolerant runtime for Charm++ and MPI
As high performance clusters continue to grow in size, the mean time between failure shrinks. Thus, the issues of fault tolerance and reliability are becoming one of the challengi...
Gengbin Zheng, Lixia Shi, Laxmikant V. Kalé
HPDC
2007
IEEE
13 years 11 months ago
MOB: zero-configuration high-throughput multicasting for grid applications
Grid applications often need to distribute large amounts of data efficiently from one cluster to multiple others (multicast). Existing methods usually arrange nodes in optimized t...
Mathijs den Burger, Thilo Kielmann