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» Performance Measurement of Interpreted Programs
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BMCBI
2008
162views more  BMCBI 2008»
13 years 10 months ago
Background correction using dinucleotide affinities improves the performance of GCRMA
Background: High-density short oligonucleotide microarrays are a primary research tool for assessing global gene expression. Background noise on microarrays comprises a significan...
Raad Z. Gharaibeh, Anthony Fodor, Cynthia Gibas
BROADNETS
2006
IEEE
14 years 4 months ago
Transparent Optimization of Grid Server Selection With Real-Time Passive Network Measurements
Grid services have tremendously simplified the programming challenges in leveraging large-scale distributed comAt the same time, the increased level of abstraction reduces the op...
Marcia Zangrilli, Bruce Lowekamp
BMCBI
2006
96views more  BMCBI 2006»
13 years 10 months ago
Structure alignment based on coding of local geometric measures
Background: A structure alignment method based on a local geometric property is presented and its performance is tested in pairwise and multiple structure alignments. In this appr...
Peter L. Chang, Andrew W. Rinne, T. Gregory Dewey
BMCBI
2010
208views more  BMCBI 2010»
13 years 10 months ago
Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene
Background: Image analysis is an essential component in many biological experiments that study gene expression, cell cycle progression, and protein localization. A protocol for tr...
Zafer Aydin, John I. Murray, Robert H. Waterston, ...
SPE
1998
129views more  SPE 1998»
13 years 9 months ago
Timing Trials, or the Trials of Timing: Experiments with Scripting and User-Interface Languages
This paper describes some basic experiments to see how fast various popular scripting and user-interface languages run on a spectrum of representative tasks. We found enormous var...
Brian W. Kernighan, Christopher J. Van Wyk