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131
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SAC
2009
ACM
15 years 9 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
123
Voted
HPCC
2005
Springer
15 years 8 months ago
Memory Subsystem Characterization in a 16-Core Snoop-Based Chip-Multiprocessor Architecture
In this paper we present an exhaustive evaluation of the memory subsystem in a chip-multiprocessor (CMP) architecture composed of 16 cores. The characterization is performed making...
Francisco J. Villa, Manuel E. Acacio, José ...
124
Voted
ISHPC
2000
Springer
15 years 6 months ago
Automatic Generation of OpenMP Directives and Its Application to Computational Fluid Dynamics Codes
The shared-memory programming model is a very effective way to achieve parallelism on shared memory parallel computers. As great progress was made in hardware and software technolo...
Haoqiang Jin, Michael A. Frumkin, Jerry C. Yan
111
Voted
PLILP
1993
Springer
15 years 6 months ago
An OR Parallel Prolog Model for Distributed Memory Systems
This paper shows a multisequential model to exploit OR parallelism on distributed memory systems. It presents an implementation of the incremental copy mechanism oriented to distr...
Vicente Benjumea, José M. Troya
103
Voted
HPDC
1996
IEEE
15 years 6 months ago
Shared Memory NUMA Programming on I-WAY
The performance of the Global Array shared-memory nonuniform memory-access programming model is explored on the I-WAY, wide-area-network distributed supercomputer environment. The...
Jarek Nieplocha, Robert J. Harrison