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BMCBI
2008
118views more  BMCBI 2008»
13 years 7 months ago
DOVIS: an implementation for high-throughput virtual screening using AutoDock
Background: Molecular-docking-based virtual screening is an important tool in drug discovery that is used to significantly reduce the number of possible chemical compounds to be i...
Shuxing Zhang, Kamal Kumar, Xiaohui Jiang, Anders ...
SAINT
2007
IEEE
14 years 1 months ago
Data Management on Grid Filesystem for Data-Intensive Computing
In parallel computing environments such as HPC clusters and the Grid, data-intensive applications involve large overhead costs due to a concentration of access to the files on co...
Hitoshi Sato, Satoshi Matsuoka
WMPI
2004
ACM
14 years 29 days ago
SCIMA-SMP: on-chip memory processor architecture for SMP
Abstract. In this paper, we propose a processor architecture with programmable on-chip memory for a high-performance SMP (symmetric multi-processor) node named SCIMA-SMP (Software ...
Chikafumi Takahashi, Masaaki Kondo, Taisuke Boku, ...
PVM
2010
Springer
13 years 6 months ago
Enabling Concurrent Multithreaded MPI Communication on Multicore Petascale Systems
With the ever-increasing numbers of cores per node on HPC systems, applications are increasingly using threads to exploit the shared memory within a node, combined with MPI across ...
Gábor Dózsa, Sameer Kumar, Pavan Bal...
IPPS
2007
IEEE
14 years 1 months ago
Babel Remote Method Invocation
Babel is a high-performance, n-way language interoperability tool for the HPC community that now includes support for distributed computing via Remote Method Invocation (RMI). We ...
Gary Kumfert, James Leek, Thomas Epperly