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126
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BMCBI
2010
102views more  BMCBI 2010»
15 years 3 months ago
Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
Background: Chromatin immunoprecipitation followed by microarray hybridization (ChIP-chip) is used to study protein-DNA interactions and histone modifications on a genome-scale. T...
Shouyong Peng, Mitzi I. Kuroda, Peter J. Park
110
Voted
BMCBI
2006
96views more  BMCBI 2006»
15 years 3 months ago
Structure alignment based on coding of local geometric measures
Background: A structure alignment method based on a local geometric property is presented and its performance is tested in pairwise and multiple structure alignments. In this appr...
Peter L. Chang, Andrew W. Rinne, T. Gregory Dewey
117
Voted
ICPP
2009
IEEE
15 years 10 months ago
Integrated Performance Views in Charm++: Projections Meets TAU
Abstract—The Charm++ parallel programming system provides a modular performance interface that can be used to extend its performance measurement and analysis capabilities. The in...
Scott Biersdorff, Chee Wai Lee, Allen D. Malony, L...
140
Voted
SIGMETRICS
2005
ACM
15 years 9 months ago
The performance impact of kernel prefetching on buffer cache replacement algorithms
A fundamental challenge in improving the file system performance is to design effective block replacement algorithms to minimize buffer cache misses. Despite the well-known int...
Ali Raza Butt, Chris Gniady, Y. Charlie Hu
145
Voted
ICST
2009
IEEE
15 years 1 months ago
Test Redundancy Measurement Based on Coverage Information: Evaluations and Lessons Learned
Measurement and detection of redundancy in test suites attempt to achieve test minimization which in turn can help reduce test maintenance costs, and to also ensure the integrity ...
Negar Koochakzadeh, Vahid Garousi, Frank Maurer