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BMCBI
2006
137views more  BMCBI 2006»
15 years 4 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
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BMCBI
2006
100views more  BMCBI 2006»
15 years 4 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
BMCBI
2006
137views more  BMCBI 2006»
15 years 4 months ago
Bounded search for de novo identification of degenerate cis-regulatory elements
Background: The identification of statistically overrepresented sequences in the upstream regions of coregulated genes should theoretically permit the identification of potential ...
Jonathan M. Carlson, Arijit Chakravarty, Radhika S...
CN
2007
99views more  CN 2007»
15 years 4 months ago
Mistreatment-resilient distributed caching
The distributed partitioning of autonomous, self-aware nodes into cooperative groups, within which scarce resources could be effectively shared for the benefit of the group, is ...
Georgios Smaragdakis, Nikolaos Laoutaris, Azer Bes...
IJON
2006
109views more  IJON 2006»
15 years 4 months ago
Integrating the improved CBP model with kernel SOM
In this paper, we first design a more generalized network model, Improved CBP, based on the same structure as Circular BackPropagation (CBP) proposed by Ridella et al. The novelty ...
Qun Dai, Songcan Chen
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