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» Performance of Runtime Optimization on BLAST
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IPPS
1997
IEEE
13 years 11 months ago
Platform-Independent Runtime Optimizations Using OpenThreads
Although platform-independent runtime systems for parallel programming languages are desirable, the need for low-level optimizations usually precludes their existence. This is bec...
Matthew Haines, Koen Langendoen
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 2 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
IPPS
2003
IEEE
14 years 23 days ago
Optimizing Performance and Reliability in Distributed Computing Systems through Wide Spectrum Storage
In this paper, we provide an overview of Logistical Runtime System (LoRS). LoRS is an integrated ensemble of tools and services that aggregate primitive (best effort, faulty) stor...
James S. Plank, Micah Beck, Jack Dongarra, Richard...
ENTCS
2002
166views more  ENTCS 2002»
13 years 7 months ago
Translation and Run-Time Validation of Optimized Code
The paper presents approaches to the validation of optimizing compilers. The emphasis is on aggressive and architecture-targeted optimizations which try to obtain the highest perf...
Lenore D. Zuck, Amir Pnueli, Yi Fang, Benjamin Gol...
AMW
2010
13 years 9 months ago
Run-time Optimization for Pipelined Systems
Traditional optimizers fail to pick good execution plans, when faced with increasingly complex queries and large data sets. This failure is even more acute in the context of XQuery...
Riham Abdel Kader, Maurice van Keulen, Peter A. Bo...