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» Performance of Runtime Optimization on BLAST
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EUC
2006
Springer
13 years 11 months ago
Optimizing Scheduling Stability for Runtime Data Alignment
Runtime data alignment has been paid attention recently since it can allocate data segment to processors dynamically according to applications' requirement. One of the key opt...
Ching-Hsien Hsu, Chao-Yang Lan, Shih-Chang Chen
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
ICDE
2010
IEEE
211views Database» more  ICDE 2010»
14 years 2 months ago
ROX: The robustness of a run-time XQuery optimizer against correlated data
— We demonstrate ROX, a run-time optimizer of XQueries, that focuses on finding the best execution order of XPath steps and relational joins in an XQuery. The problem of join or...
Riham Abdel Kader, Peter A. Boncz, Stefan Manegold...
CORR
2008
Springer
98views Education» more  CORR 2008»
13 years 6 months ago
On Outage and Error Rate Analysis of the Ordered V-BLAST
Outage and error rate performance of the ordered BLAST with more than 2 transmit antennas is evaluated for i.i.d. Rayleigh fading channels. A number of lower and upper bounds on th...
Sergey Loyka, François Gagnon
ICCSA
2004
Springer
14 years 27 days ago
A Sequence-Focused Parallelisation of EMBOSS on a Cluster of Workstations
Abstract. A number of individual bioinformatics applications (particularly BLAST and other sequence searching methods) have recently been implemented over clusters of workstations ...
Karl Podesta, Martin Crane, Heather J. Ruskin