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BMCBI
2006
86views more  BMCBI 2006»
13 years 7 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
ECOOP
2006
Springer
13 years 11 months ago
Demeter Interfaces: Adaptive Programming Without Surprises
Adaptive Programming (AP) allows for the separate definition of data structures and traversals with attached computations, performed during the traversal, that operate on these dat...
Therapon Skotiniotis, Jeffrey Palm, Karl J. Lieber...
CGF
2008
142views more  CGF 2008»
13 years 7 months ago
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context
DNA microarrays are used to measure the expression levels of thousands of genes simultaneously. In a time series experiment, the gene expressions are measured as a function of tim...
Michel A. Westenberg, Sacha A. F. T. van Hijum, Os...
BMCBI
2011
13 years 2 months ago
pROC: an open-source package for R and S+ to analyze and compare ROC curves
Background: Receiver operating characteristic (ROC) curves are useful tools to evaluate classifiers in biomedical and bioinformatics applications. However, conclusions are often r...
Xavier Robin, Natacha Turck, Alexandre Hainard, Na...
RCIS
2010
13 years 6 months ago
A Tree-based Approach for Efficiently Mining Approximate Frequent Itemsets
—The strategies for mining frequent itemsets, which is the essential part of discovering association rules, have been widely studied over the last decade. In real-world datasets,...
Jia-Ling Koh, Yi-Lang Tu