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BMCBI
2004
123views more  BMCBI 2004»
13 years 8 months ago
A two-way interface between limited Systems Biology Markup Language and R
Background: Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programm...
Tomas Radivoyevitch
BMCBI
2008
163views more  BMCBI 2008»
13 years 8 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
ENTCS
2010
111views more  ENTCS 2010»
13 years 6 months ago
Modular Verification of Interactive Systems with an Application to Biology
We propose an automata-based formalism for the description of biological systems that allows properties expressed in the universal fragment of CTL to be verified in a modular way....
Peter Drábik, Andrea Maggiolo-Schettini, Pa...
GECCO
2008
Springer
158views Optimization» more  GECCO 2008»
13 years 9 months ago
Structure and parameter estimation for cell systems biology models
In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our modelling framework is based on P systems, an unconl comput...
Francisco José Romero-Campero, Hongqing Cao...
RECOMB
2005
Springer
14 years 9 months ago
The Factor Graph Network Model for Biological Systems
Abstract. We introduce an extended computational framework for studying biological systems. Our approach combines formalization of existing qualitative models that are in wide but ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...