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CORR
2010
Springer
200views Education» more  CORR 2010»
13 years 9 months ago
Unified Compression-Based Acceleration of Edit-Distance Computation
The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming s...
Danny Hermelin, Gad M. Landau, Shir Landau, Oren W...
DLT
2008
13 years 10 months ago
Derivation Tree Analysis for Accelerated Fixed-Point Computation
We show that for several classes of idempotent semirings the least fixed-point of a polynomial system of equations X = f(X) is equal to the least fixed-point of a linear system obt...
Javier Esparza, Stefan Kiefer, Michael Luttenberge...
FCCM
2005
IEEE
96views VLSI» more  FCCM 2005»
14 years 2 months ago
Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations
Abstract: Molecular Dynamics (MD) is of central importance to computational chemistry and its myriad applications. Here we show that, at even a preliminary stage of development, MD...
Yongfeng Gu, Tom Van Court, Douglas DiSabello, Mar...
ARC
2007
Springer
140views Hardware» more  ARC 2007»
14 years 25 days ago
Reconfigurable Computing for Accelerating Protein Folding Simulations
Abstract. This paper presents a methodology for the design of a reconfigurable computing system applied to a complex problem in molecular Biology: the protein folding problem. An e...
Nilton B. Armstrong, Heitor S. Lopes, Carlos R. Er...
WWW
2005
ACM
14 years 9 months ago
A uniform approach to accelerated PageRank computation
In this note we consider a simple reformulation of the traditional power iteration algorithm for computing the stationary distribution of a Markov chain. Rather than communicate t...
Frank McSherry