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ICCABS
2011
13 years 18 days ago
Towards accelerating molecular modeling via multi-scale approximation on a GPU
—Research efforts to analyze biomolecular properties contribute towards our understanding of biomolecular function. Calculating non-bonded forces (or in our case, electrostatic s...
Mayank Daga, Wu-chun Feng, Thomas Scogland
IPPS
2009
IEEE
14 years 3 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
FPL
2004
Springer
105views Hardware» more  FPL 2004»
14 years 2 months ago
FPGA Acceleration of Rigid Molecule Interactions
Abstract: We show how an application of central importance to computational biochemistry can be implemented efficiently on an FPGA. This requires reformulating the algorithm and ta...
Tom Van Court, Yongfeng Gu, Martin C. Herbordt
DAC
1989
ACM
14 years 28 days ago
Special Purpose Architecture for Accelerating Bitmap DRC
In this paper we propose algorithms for performing DRC on a bitmapped layout altd developspecial purpose architecture for its implementation. we Use window scan method, with flexib...
Narasimha B. Bhat, S. K. Nandy
EUROPAR
2010
Springer
13 years 9 months ago
Source-to-Source Optimization of CUDA C for GPU Accelerated Cardiac Cell Modeling
Large and complex systems of ordinary differential equations (ODEs) arise in diverse areas of science and engineering, and pose special challenges on a streaming processor owing to...
Fred V. Lionetti, Andrew D. McCulloch, Scott B. Ba...