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BMCBI
2004
122views more  BMCBI 2004»
13 years 9 months ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich
BMCBI
2004
177views more  BMCBI 2004»
13 years 9 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
BMCBI
2004
228views more  BMCBI 2004»
13 years 9 months ago
An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results
Background: Many proteomics initiatives require a seamless bioinformatics integration of a range of analytical steps between sample collection and systems modeling immediately ass...
Romesh Stanislaus, Liu Hong Jiang, Martha Swartz, ...
BSL
2004
110views more  BSL 2004»
13 years 9 months ago
Notes on quasiminimality and excellence
This paper ties together much of the model theory of the last 50 years. Shelah's attempts to generalize the Morley theorem beyond first order logic led to the notion of excel...
John T. Baldwin
ACTA
2000
82views more  ACTA 2000»
13 years 9 months ago
Semantics analysis through elementary meanings
Thesaurus is a collection of words classified according to some relatedness measures among them. In this paper, we lay the theoretical foundations of thesaurus construction through...
Youichi Kobuchi, Takashi Saito, Hidenobu Nunome