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BMCBI
2006
110views more  BMCBI 2006»
13 years 11 months ago
CpGcluster: a distance-based algorithm for CpG-island detection
Background: Despite their involvement in the regulation of gene expression and their importance as genomic markers for promoter prediction, no objective standard exists for defini...
Michael Hackenberg, Christopher Previti, Pedro Lui...
CIBCB
2007
IEEE
14 years 5 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
EUROMICRO
2005
IEEE
14 years 4 months ago
Composition Assessment Metrics for CBSE
Objective: Formal definition of composition assessment metrics for CBSE, using an extension of the CORBA Component Model metamodel as the ontology for describing component assembl...
Miguel Goulão, Fernando Brito e Abreu
JCB
2006
124views more  JCB 2006»
13 years 11 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
BIBM
2010
IEEE
286views Bioinformatics» more  BIBM 2010»
13 years 9 months ago
Evaluation of short read metagenomic assembly
Advances in sequencing technologies have equipped researchers with the ability to sequence the collective genome of entire microbial communities commonly referred to as metagenomi...
Anveshi Charuvaka, Huzefa Rangwala