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» Physics-based simulation of biological structures
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CPHYSICS
2007
96views more  CPHYSICS 2007»
13 years 7 months ago
Simple models for biomembrane structure and dynamics
Simulation of biomembranes over length and time scales relevant to cellular biology is not currently feasible with molecular dynamics including full atomic detail. Barring an unfo...
Frank L. H. Brown
KES
2007
Springer
14 years 1 months ago
A Hybrid Symbolic-Statistical Approach to Modeling Metabolic Networks
Biological systems consist of many components and interactions between them. In Systems Biology the principal problem is modeling complex biological systems and reconstructing inte...
Marenglen Biba, Stefano Ferilli, Nicola Di Mauro, ...
BMCBI
2008
174views more  BMCBI 2008»
13 years 7 months ago
Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset
Background: Inferring gene regulatory networks from data requires the development of algorithms devoted to structure extraction. When only static data are available, gene interact...
Cédric Auliac, Vincent Frouin, Xavier Gidro...
JCC
2006
110views more  JCC 2006»
13 years 7 months ago
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm
: This article describes a method for solving the geometric closure problem for simplified models of nucleic acid structures by using the constant bond lengths approximation. The r...
Heinz Sklenar, Daniel Wüstner, Remo Rohs
GECCO
2005
Springer
127views Optimization» more  GECCO 2005»
14 years 1 months ago
Sufficiency verification of HIV-1 pathogenesis based on multi-agent simulation
Researchers of HIV-1 are today, still unable to determine exactly the biological mechanisms that cause AIDS. Various mechanisms have been hypothesized and their existences have be...
Zaiyi Guo, Hann Kwang Han, Joc Cing Tay