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» PiQA: An Algebra for Querying Protein Data Sets
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NIPS
2008
13 years 8 months ago
Predicting the Geometry of Metal Binding Sites from Protein Sequence
Metal binding is important for the structural and functional characterization of proteins. Previous prediction efforts have only focused on bonding state, i.e. deciding which prot...
Paolo Frasconi, Andrea Passerini
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
13 years 11 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya
VLDB
2005
ACM
125views Database» more  VLDB 2005»
14 years 7 months ago
Sync your data: update propagation for heterogeneous protein databases
The traditional model of bench (wet) chemistry in many life sciences domain is today actively complimented by computer-based discoveries utilizing the growing number of online data...
Kajal T. Claypool, Elke A. Rundensteiner
NAR
2000
103views more  NAR 2000»
13 years 7 months ago
The Homeodomain Resource: a prototype database for a large protein family
The Homeodomain Resource is an annotated collection of non-redundant protein sequences, three-dimensional structures and genomic information for the homeodomain protein family. Re...
Sharmila Banerjee-Basu, Joseph F. Ryan, Andreas D....
IDEAS
2000
IEEE
108views Database» more  IDEAS 2000»
13 years 11 months ago
Plug and Play with Query Algebras: SECONDO-A Generic DBMS Development Environment
We present SECONDO, a new generic environment supporting the implementation of database systems for a wide range of data models and query languages. On the one hand, this framewor...
Stefan Dieker, Ralf Hartmut Güting