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COMPGEOM
2003
ACM
14 years 1 months ago
Cache-oblivious data structures for orthogonal range searching
We develop cache-oblivious data structures for orthogonal range searching, the problem of finding all T points in a set of N points in Êd lying in a query hyper-rectangle. Cache...
Pankaj K. Agarwal, Lars Arge, Andrew Danner, Bryan...
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 2 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
SIGMOD
2012
ACM
203views Database» more  SIGMOD 2012»
11 years 10 months ago
Optimizing index for taxonomy keyword search
Query substitution is an important problem in information retrieval. Much work focuses on how to find substitutes for any given query. In this paper, we study how to efficiently ...
Bolin Ding, Haixun Wang, Ruoming Jin, Jiawei Han, ...
ICFP
2009
ACM
14 years 8 months ago
A theory of typed coercions and its applications
A number of important program rewriting scenarios can be recast as type-directed coercion insertion. These range from more theoretical applications such as coercive subtyping and ...
Nikhil Swamy, Michael W. Hicks, Gavin M. Bierman
BMCBI
2006
98views more  BMCBI 2006»
13 years 7 months ago
In search of functional association from time-series microarray data based on the change trend and level of gene expression
Background: The increasing availability of time-series expression data opens up new possibilities to study functional linkages of genes. Present methods used to infer functional l...
Feng He, An-Ping Zeng