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IPPS
2003
IEEE
14 years 1 months ago
Performing DNA Comparison on a Bio-Inspired Tissue of FPGAs
String comparison is a critical issue in many application domains, including speech recognition, contents search, and bioinformatics. The similarity between two strings of lengths...
Matteo Canella, Filippo Miglioli, Alessandro Bogli...
SCALESPACE
1999
Springer
13 years 12 months ago
A Scale-Space Based Approach for Deformable Contour Optimization
Abstract. Multiresolution techniques are often used to shorten the execution times of dynamic programming based deformable contour optimization methods by decreasing the image reso...
Yusuf Sinan Akgul, Chandra Kambhamettu
CSB
2004
IEEE
123views Bioinformatics» more  CSB 2004»
13 years 11 months ago
A New Hardware Architecture for Genomic and Proteomic Sequence Alignment
We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...
Greg Knowles, Paul Gardner-Stephen
CIDU
2010
13 years 5 months ago
Optimal Partitions of Data In Higher Dimensions
Given any collection of data cells in a data space X, consider the problem of finding the optimal partition of the data cells into blocks which are unions of cells. The algorithms...
Bradley W. Jackson, Jeffrey D. Scargle, Chris Cusa...
CGO
2006
IEEE
14 years 1 months ago
A Cross-Architectural Interface for Code Cache Manipulation
Software code caches help amortize the overhead of dynamic binary transformation by enabling reuse of transformed code. Since code caches contain a potentiallyaltered copy of ever...
Kim M. Hazelwood, Robert S. Cohn