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CCECE
2006
IEEE
14 years 1 months ago
A Formal CSP Framework for Message-Passing HPC Programming
To help programmers of high-performance computing (HPC) systems avoid communication-related errors, we employ a formal process algebra, Communicating Sequential Processes (CSP), w...
John D. Carter, William B. Gardner
BMCBI
2008
108views more  BMCBI 2008»
13 years 7 months ago
SPRINT: A new parallel framework for R
Background: Microarray analysis allows the simultaneous measurement of thousands to millions of genes or sequences across tens to thousands of different samples. The analysis of t...
Jon Hill, Matthew Hambley, Thorsten Forster, Murie...
IPPS
2005
IEEE
14 years 1 months ago
A Case Study on Pattern-Based Systems for High Performance Computational Biology
Computational biology research is now faced with the burgeoning number of genome data. The rigorous postprocessing of this data requires an increased role for high performance com...
Weiguo Liu, Bertil Schmidt
ISPAN
2005
IEEE
14 years 1 months ago
Using Predictive Adaptive Parallelism to Address Portability and Irregularity
A semi-dynamic system is presented that is capable of predicting the performance of parallel programs at runtime. The functionality given by the system allows for efficient handl...
David Wangerin, Isaac D. Scherson