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BMCBI
2008
140views more  BMCBI 2008»
13 years 7 months ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh
BMCBI
2010
142views more  BMCBI 2010»
13 years 7 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
CORR
2010
Springer
99views Education» more  CORR 2010»
13 years 7 months ago
A New Phase Transition for Local Delays in MANETs
: We study a slotted version of the Aloha Medium Access (MAC) protocol in a Mobile Ad-hoc Network (MANET). Our model features transmitters randomly located in the Euclidean plane, ...
François Baccelli, Bartek Blaszczyszyn
CORR
2008
Springer
121views Education» more  CORR 2008»
13 years 7 months ago
Rate-Distortion via Markov Chain Monte Carlo
We propose an approach to lossy source coding, utilizing ideas from Gibbs sampling, simulated annealing, and Markov Chain Monte Carlo (MCMC). The idea is to sample a reconstructio...
Shirin Jalali, Tsachy Weissman
ASE
2006
110views more  ASE 2006»
13 years 7 months ago
Runtime recovery and manipulation of software architecture of component-based systems
Recently, more attention is paid to the researches and practices on how to use software architecture in software maintenance and evolution to reduce their complexity and cost. The ...
Gang Huang, Hong Mei, Fuqing Yang