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» Practical Suffix Tree Construction
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ESA
1998
Springer
169views Algorithms» more  ESA 1998»
14 years 7 days ago
Augmenting Suffix Trees, with Applications
Information retrieval and data compression are the two main application areas where the rich theory of string algorithmics plays a fundamental role. In this paper, we consider one ...
Yossi Matias, S. Muthukrishnan, Süleyman Cenk...
ICDE
2007
IEEE
190views Database» more  ICDE 2007»
13 years 12 months ago
CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences
Suffix tree is an important data structure for indexing a long sequence (like a genome sequence) or a concatenation of sequences. It finds many applications in practice, especiall...
Swee-Seong Wong, Wing-Kin Sung, Limsoon Wong
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
14 years 8 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
EDBT
2010
ACM
155views Database» more  EDBT 2010»
13 years 11 months ago
Suffix tree construction algorithms on modern hardware
Suffix trees are indexing structures that enhance the performance of numerous string processing algorithms. In this paper, we propose cache-conscious suffix tree construction algo...
Dimitris Tsirogiannis, Nick Koudas
WEA
2010
Springer
205views Algorithms» more  WEA 2010»
13 years 5 months ago
Practical Compressed Suffix Trees
Abstract. The suffix tree is an extremely important data structure for stringology, with a wealth of applications in bioinformatics. Classical implementations require much space, w...
Rodrigo Cánovas, Gonzalo Navarro