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» Predicting Peroxisomal Proteins
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CIBCB
2005
IEEE
14 years 1 months ago
Intrinsic Disorder and Protein modifications: Building an SVM Predictor for Methylation
Abstract-Post-translational protein modifications play an important role in many protein pathways and interactions. It has been hypothesized that modifications to proteins occur in...
Kenneth Daily, Predrag Radivojac, A. Keith Dunker
BMCBI
2010
95views more  BMCBI 2010»
13 years 8 months ago
Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions
Background: Accurate evaluation and modelling of residue-residue interactions within and between proteins is a key aspect of computational structure prediction including homology ...
Vladimir Potapov, Mati Cohen, Yuval Inbar, Gideon ...
IJDMB
2007
110views more  IJDMB 2007»
13 years 8 months ago
Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles
: Phylogenetic profiles of proteins  strings of ones and zeros encoding respectively the presence and absence of proteins in a group of genomes  have recently been used to id...
Roger A. Craig, Li Liao
GECCO
2006
Springer
176views Optimization» more  GECCO 2006»
13 years 12 months ago
A genetic algorithm with backtracking for protein structure prediction
In this paper, we propose a simple genetic algorithm for finding the optimal conformation of a protein using the three-dimensional square HP model. A backtracking procedure is use...
Clayton Matthew Johnson, Anitha Katikireddy
BIOINFORMATICS
2000
149views more  BIOINFORMATICS 2000»
13 years 8 months ago
MaxSub: an automated measure for the assessment of protein structure prediction quality
Motivation: Evaluating the accuracy of predicted models is critical for assessing structure prediction methods. Because this problem is not trivial, a large number of different as...
Naomi Siew, Arne Elofsson, Leszek Rychlewski, Dani...